miRNA display CGI


Results 41 - 60 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 55129 0.67 1
Target:  5'- cCCUUUAAauCCUAAGCUAUAaACa-- -3'
miRNA:   3'- -GGAAAUUguGGAUUCGAUGUaUGagu -5'
28294 3' -42.8 NC_005902.1 + 112963 0.67 1
Target:  5'- cCCUUUAACACaUAAGUaAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGgAUUCGaUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 58401 0.68 1
Target:  5'- uUUUUAACAUUUAuaCUAUAUACUCAu -3'
miRNA:   3'- gGAAAUUGUGGAUucGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 71324 0.68 1
Target:  5'- --gUUAACAUCUAAGUUAUAUAUa-- -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 90423 0.68 1
Target:  5'- aCUUUAACAUCUAAGUgUAUAUAUa-- -3'
miRNA:   3'- gGAAAUUGUGGAUUCG-AUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 72828 0.66 1
Target:  5'- aCCUUUuaaACCUAuAGCUcCAUAUUCc -3'
miRNA:   3'- -GGAAAuugUGGAU-UCGAuGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 151368 0.68 1
Target:  5'- uCCUUUAAauCCUaAAGCU-UAUACUCAu -3'
miRNA:   3'- -GGAAAUUguGGA-UUCGAuGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 31157 0.68 1
Target:  5'- cCCUUUAACuCCU---CUACAUGCUg- -3'
miRNA:   3'- -GGAAAUUGuGGAuucGAUGUAUGAgu -5'
28294 3' -42.8 NC_005902.1 + 139069 0.68 1
Target:  5'- -aUUUAAagaaUUAAGCUAUAUACUCAc -3'
miRNA:   3'- ggAAAUUgug-GAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 23979 0.67 1
Target:  5'- uCCUUUAACAUCUAAaCUAUAUAa--- -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUgagu -5'
28294 3' -42.8 NC_005902.1 + 97050 0.67 1
Target:  5'- cUCUUUAACuCCUAAaGC-AUAUACUUAu -3'
miRNA:   3'- -GGAAAUUGuGGAUU-CGaUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 90612 0.67 1
Target:  5'- ----aAACACCUAAGCUGUAUAUg-- -3'
miRNA:   3'- ggaaaUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 43526 0.69 0.999999
Target:  5'- cCUUUUAACAUCUAAcCUAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 125545 0.69 0.999999
Target:  5'- --gUUAACAUUUAAGCUAUAUAUaCAc -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUGaGU- -5'
28294 3' -42.8 NC_005902.1 + 153032 0.69 0.999999
Target:  5'- aCUUUuaAACAUUUAAGCUAUGUACa-- -3'
miRNA:   3'- gGAAA--UUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 72219 0.69 0.999999
Target:  5'- uCCgUUAACACCUAAaCUAUAUAUaCAu -3'
miRNA:   3'- -GGaAAUUGUGGAUUcGAUGUAUGaGU- -5'
28294 3' -42.8 NC_005902.1 + 178363 0.69 0.999999
Target:  5'- uUUUUAcucUACCUAAGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUu--GUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 23227 0.69 0.999999
Target:  5'- uUUUUAAC-CCUuaaAAGCUAUAUAUUCu -3'
miRNA:   3'- gGAAAUUGuGGA---UUCGAUGUAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 148241 0.69 0.999998
Target:  5'- uCUUUUAACAUUUAAGCUuAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGA-UGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 127379 0.69 0.999998
Target:  5'- uCCUUUAAgacUACUUGuuCUAUAUACUCAc -3'
miRNA:   3'- -GGAAAUU---GUGGAUucGAUGUAUGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.