miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 3477 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 136082 0.7 0.99998
Target:  5'- cUUGUuUGUAuaUAGCUUAGGaGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 162625 0.78 0.962738
Target:  5'- cUUGUuUGUAuaUAGCUUGGGUGUUAAc -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 52366 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 42264 0.77 0.981116
Target:  5'- -aUGaGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 67389 0.76 0.991684
Target:  5'- --aGUGUGUAuaUAGCUUAaGUGUUAAAa -3'
miRNA:   3'- aaaCACACAU--AUCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 113819 0.67 1
Target:  5'- -aUGUauaUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaACAcacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 92196 0.67 0.999999
Target:  5'- aUUGUuUGUAuaUAGCUUAGGUaUUAAAu -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 63393 0.66 1
Target:  5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 97471 0.71 0.999903
Target:  5'- cUUGUuUGUAUAuaaCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcACAUAUc--GAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 157890 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 163419 0.73 0.998839
Target:  5'- --cGUGaGUAaauauaUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aaaCACaCAU------AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 34741 0.74 0.997126
Target:  5'- ----aGUGUAgcaacuaaauauauaUAGCUUAGGUGUUAAGa -3'
miRNA:   3'- aaacaCACAU---------------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 45115 0.75 0.994811
Target:  5'- cUUGUucGUaUAUAGCUUAGGUGUUAu- -3'
miRNA:   3'- aAACA--CAcAUAUCGAAUCCACAAUuu -5'
28294 5' -42.7 NC_005902.1 + 30823 0.66 1
Target:  5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 43887 0.76 0.990361
Target:  5'- ----aGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 18886 0.76 0.990361
Target:  5'- ----aGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 57253 0.77 0.981116
Target:  5'- -cUGUgaGUGUAaacaaguauaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACA--CACAU----------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 145071 0.72 0.99963
Target:  5'- --aGUGUaUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aaaCACAcAUAUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 135833 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.