miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 5' -41.2 NC_005902.1 + 85806 0.66 1
Target:  5'- cCACau-UGUAAuaauGCUUUGGGGUUa-- -3'
miRNA:   3'- aGUGaauACAUU----CGAAAUCCCAAauu -5'
28295 5' -41.2 NC_005902.1 + 169635 0.67 1
Target:  5'- aCACUUGUauaAAGCUUUGGGaUUUAAu -3'
miRNA:   3'- aGUGAAUAca-UUCGAAAUCCcAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 149721 0.68 1
Target:  5'- cUCACUUGUaUAAGCcUUAGGaUUUAAa -3'
miRNA:   3'- -AGUGAAUAcAUUCGaAAUCCcAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 23323 0.69 1
Target:  5'- -aGCUaUAUGUAAGCauugcaaacaUUAGGGUUUAAc -3'
miRNA:   3'- agUGA-AUACAUUCGa---------AAUCCCAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 97535 0.66 1
Target:  5'- uUCACUcAUaUAAGCcucGGGGUUUAAa -3'
miRNA:   3'- -AGUGAaUAcAUUCGaaaUCCCAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 49624 0.69 1
Target:  5'- uUUACUUAUaUAAGCcUUAGGGgUUAAa -3'
miRNA:   3'- -AGUGAAUAcAUUCGaAAUCCCaAAUU- -5'
28295 5' -41.2 NC_005902.1 + 173299 0.71 0.999998
Target:  5'- uUUGCUUAUaUAAGCUaUGGGGUUa-- -3'
miRNA:   3'- -AGUGAAUAcAUUCGAaAUCCCAAauu -5'
28295 5' -41.2 NC_005902.1 + 5682 0.71 0.999997
Target:  5'- aCACUUAuuUGUAuauAGCUUaGGGGUUa-- -3'
miRNA:   3'- aGUGAAU--ACAU---UCGAAaUCCCAAauu -5'
28295 5' -41.2 NC_005902.1 + 46470 0.74 0.999876
Target:  5'- cUUACUUGUauaUAAGCcUUAGGGUUUAAc -3'
miRNA:   3'- -AGUGAAUAc--AUUCGaAAUCCCAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 15399 0.75 0.999422
Target:  5'- -aACaaGUGUAAGCcUUAGGGUUUAAc -3'
miRNA:   3'- agUGaaUACAUUCGaAAUCCCAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 37039 0.76 0.998611
Target:  5'- -aGCUUAUGUAAGCUUUAGauUUUAAa -3'
miRNA:   3'- agUGAAUACAUUCGAAAUCccAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 31319 0.78 0.991869
Target:  5'- cUCACUUGUaUAAGCUUUAGGaUUUAAg -3'
miRNA:   3'- -AGUGAAUAcAUUCGAAAUCCcAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 110100 0.79 0.990571
Target:  5'- uUCACUUGUaUAAGCUUUAGGaUUUAAa -3'
miRNA:   3'- -AGUGAAUAcAUUCGAAAUCCcAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 17676 0.85 0.881624
Target:  5'- uUCACUUAUaUAAGCcUUAGGGUUUAAa -3'
miRNA:   3'- -AGUGAAUAcAUUCGaAAUCCCAAAUU- -5'
28295 5' -41.2 NC_005902.1 + 170674 1.08 0.097609
Target:  5'- cUCACUUAUGUAAGCUUUAGGGUUUAAc -3'
miRNA:   3'- -AGUGAAUACAUUCGAAAUCCCAAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.