Results 41 - 60 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28296 | 3' | -41.6 | NC_005902.1 | + | 98938 | 0.66 | 1 |
Target: 5'- aCCCUUUAACcCCUAAGcu--AUAUAa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUg -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 183213 | 0.66 | 1 |
Target: 5'- uUCUUUAGCUUUagAAGUUUcaAAUACACa -3' miRNA: 3'- gGGGAAUUGAGGa-UUCAAA--UUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 81110 | 0.66 | 1 |
Target: 5'- -aCCUUAACcCUUAAGUU--AUAUACu -3' miRNA: 3'- ggGGAAUUGaGGAUUCAAauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 148681 | 0.66 | 1 |
Target: 5'- aCUuuUUAACUCCUAAGgcaucucgaugACGCc -3' miRNA: 3'- -GGggAAUUGAGGAUUCaaauua-----UGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 48461 | 0.66 | 1 |
Target: 5'- aCCUUUUAGCUCCUAuGgcauuaUUGAUAacaGCg -3' miRNA: 3'- -GGGGAAUUGAGGAUuCa-----AAUUAUg--UG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 172815 | 0.67 | 1 |
Target: 5'- aCCCUUUAACaCCUAAGcu--AUAUAUg -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 155212 | 0.67 | 1 |
Target: 5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 91578 | 0.68 | 1 |
Target: 5'- uUUCUUAACUCCUAAGgcauuGUcuauaACACa -3' miRNA: 3'- gGGGAAUUGAGGAUUCaaau-UA-----UGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 120245 | 0.68 | 1 |
Target: 5'- aCCCUUUAACaCCUGAGcu--AUAUGCu -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 48222 | 0.68 | 1 |
Target: 5'- aUCCUUUAACUCUUAAGc----UACAUa -3' miRNA: 3'- -GGGGAAUUGAGGAUUCaaauuAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 117002 | 0.68 | 1 |
Target: 5'- aCCaUUUAAUUCCUAAGUcuuAUACAa -3' miRNA: 3'- gGG-GAAUUGAGGAUUCAaauUAUGUg -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 184861 | 0.68 | 1 |
Target: 5'- aCCCUUUAACaCCUAAGcuguAUAUAUg -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 18856 | 0.68 | 1 |
Target: 5'- aCCUUUUAACaCCUAAGcuauAUACGCu -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 105951 | 0.68 | 1 |
Target: 5'- -aUUUUuACUCCUGAGguagUUGAUGCAUu -3' miRNA: 3'- ggGGAAuUGAGGAUUCa---AAUUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 107372 | 0.68 | 1 |
Target: 5'- aCCCUUUAAaUCCUAGGgcu--UAUACu -3' miRNA: 3'- -GGGGAAUUgAGGAUUCaaauuAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 175516 | 0.67 | 1 |
Target: 5'- aCCCUUUAACUCUUAAGa--------- -3' miRNA: 3'- -GGGGAAUUGAGGAUUCaaauuaugug -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 97049 | 0.67 | 1 |
Target: 5'- aCUCUUUAACUCCUAAagc--AUAUACu -3' miRNA: 3'- -GGGGAAUUGAGGAUUcaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 104839 | 0.67 | 1 |
Target: 5'- aCCCaUUAACUCUUAAGgugUUGuUAUAUc -3' miRNA: 3'- gGGG-AAUUGAGGAUUCa--AAUuAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 51849 | 0.67 | 1 |
Target: 5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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28296 | 3' | -41.6 | NC_005902.1 | + | 60466 | 0.67 | 1 |
Target: 5'- aCCCUUUAACaCCUAAGcu--AUAUAUa -3' miRNA: 3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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