miRNA display CGI


Results 41 - 60 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 85815 0.66 1
Target:  5'- ---aAUAauGCUUuGGGGUUAAAGGu -3'
miRNA:   3'- uauaUAUauUGAAuCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 90589 0.66 1
Target:  5'- -----cAUAcCUUAaGAGUUAAGGGGu -3'
miRNA:   3'- uauauaUAUuGAAUcCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 103857 0.66 1
Target:  5'- -----gAUAACaauauGGAGUUAAAGGa -3'
miRNA:   3'- uauauaUAUUGaau--CCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 124573 0.66 1
Target:  5'- uUAUAUAUAAUUUAGuguuaaaGAGUUAAGGc- -3'
miRNA:   3'- uAUAUAUAUUGAAUC-------CUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 84911 0.66 1
Target:  5'- -aGUAUAUAGCUUAaauauUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUccuc-AAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 1525 0.66 1
Target:  5'- ---aGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- uauaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 85761 0.66 1
Target:  5'- aAUAaGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- -UAUaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 133599 0.68 1
Target:  5'- --uUAUAUAAgUccUAGGAuUUAAAGGGu -3'
miRNA:   3'- uauAUAUAUUgA--AUCCUcAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 23321 0.68 1
Target:  5'- -aAUAUGUAGCUUAGGuau--AAGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCucaauUUCCc -5'
28296 5' -38 NC_005902.1 + 81950 0.68 1
Target:  5'- -aGUAUAUAGCUUA--AG-UAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUccUCaAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 20155 0.68 1
Target:  5'- uUGUGUuaAUGACaccUUAGaAGUUAAAGGGu -3'
miRNA:   3'- uAUAUA--UAUUG---AAUCcUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 158316 0.68 1
Target:  5'- -----gAUGcCUUAGGAGUUAAAGa- -3'
miRNA:   3'- uauauaUAUuGAAUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 51772 0.68 1
Target:  5'- -----aAUGcCUUAGGAGUUAAAGa- -3'
miRNA:   3'- uauauaUAUuGAAUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 24083 0.67 1
Target:  5'- uAUGUGUuauuaacgAUGcCUUAGGAGUUAAAGu- -3'
miRNA:   3'- -UAUAUA--------UAUuGAAUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 75864 0.67 1
Target:  5'- uUAUAUucugacaAUGcCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- uAUAUA-------UAUuGAAUCCUcAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 107830 0.67 1
Target:  5'- -cGUAUAUAGCUUAGauGUUAAAGa- -3'
miRNA:   3'- uaUAUAUAUUGAAUCcuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 100015 0.67 1
Target:  5'- uAUAUaAUAUAGCUUAGGuGUUAAu--- -3'
miRNA:   3'- -UAUA-UAUAUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 95549 0.67 1
Target:  5'- -cAUcgAUGAugcCUUAaGAGUUAAAGGGu -3'
miRNA:   3'- uaUAuaUAUU---GAAUcCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 120289 0.67 1
Target:  5'- -cAUAUAUAGUUcAGGuGUUAAAGGa -3'
miRNA:   3'- uaUAUAUAUUGAaUCCuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 51715 0.67 1
Target:  5'- uUGUAUAU-GCUUAaauGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAuUGAAUccuCAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.