miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28297 5' -41.5 NC_005902.1 + 106609 0.67 1
Target:  5'- uUGGUCacUAUAGACUU-CAUUUAUCc -3'
miRNA:   3'- -AUCAGcaAUAUCUGAAgGUAAAUAGa -5'
28297 5' -41.5 NC_005902.1 + 80972 0.66 1
Target:  5'- uUGGUCac-AUAGACUUC-AUUUAUCUu -3'
miRNA:   3'- -AUCAGcaaUAUCUGAAGgUAAAUAGA- -5'
28297 5' -41.5 NC_005902.1 + 77056 0.69 1
Target:  5'- -uGUCGUUAUAGACUUCau----UCa -3'
miRNA:   3'- auCAGCAAUAUCUGAAGguaaauAGa -5'
28297 5' -41.5 NC_005902.1 + 175876 0.69 1
Target:  5'- uUGGUUaUUAUAGACcgCCAUUUAUUUu -3'
miRNA:   3'- -AUCAGcAAUAUCUGaaGGUAAAUAGA- -5'
28297 5' -41.5 NC_005902.1 + 105099 0.7 0.999999
Target:  5'- uUAGUUaccGUAGACUUCUAUUUAUUa -3'
miRNA:   3'- -AUCAGcaaUAUCUGAAGGUAAAUAGa -5'
28297 5' -41.5 NC_005902.1 + 137721 0.7 0.999999
Target:  5'- uUAGU-GUUAUAGACUUCUAUUcacuUCUu -3'
miRNA:   3'- -AUCAgCAAUAUCUGAAGGUAAau--AGA- -5'
28297 5' -41.5 NC_005902.1 + 74726 0.71 0.999996
Target:  5'- uUGGUUGcUAUAaAUUUCCAUUUGUCUu -3'
miRNA:   3'- -AUCAGCaAUAUcUGAAGGUAAAUAGA- -5'
28297 5' -41.5 NC_005902.1 + 167600 0.73 0.999952
Target:  5'- uUAGUUGccAUAGAUUUCCAUUcAUCUu -3'
miRNA:   3'- -AUCAGCaaUAUCUGAAGGUAAaUAGA- -5'
28297 5' -41.5 NC_005902.1 + 54288 0.73 0.999935
Target:  5'- uUAGUUG-UGUAGACUUCC-UUUAUUUc -3'
miRNA:   3'- -AUCAGCaAUAUCUGAAGGuAAAUAGA- -5'
28297 5' -41.5 NC_005902.1 + 4727 0.78 0.995339
Target:  5'- uUAGUCGccacAGACUUCCAUUUAUUUc -3'
miRNA:   3'- -AUCAGCaauaUCUGAAGGUAAAUAGA- -5'
28297 5' -41.5 NC_005902.1 + 48351 0.94 0.461691
Target:  5'- uUAGUUGUUAUAGACUUCUGUUUAUCUu -3'
miRNA:   3'- -AUCAGCAAUAUCUGAAGGUAAAUAGA- -5'
28297 5' -41.5 NC_005902.1 + 181345 1.07 0.110457
Target:  5'- uUAGUCGUUAUAGACUUCCAUUUAUCUu -3'
miRNA:   3'- -AUCAGCAAUAUCUGAAGGUAAAUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.