Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28297 | 5' | -41.5 | NC_005902.1 | + | 106609 | 0.67 | 1 |
Target: 5'- uUGGUCacUAUAGACUU-CAUUUAUCc -3' miRNA: 3'- -AUCAGcaAUAUCUGAAgGUAAAUAGa -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 175876 | 0.69 | 1 |
Target: 5'- uUGGUUaUUAUAGACcgCCAUUUAUUUu -3' miRNA: 3'- -AUCAGcAAUAUCUGaaGGUAAAUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 77056 | 0.69 | 1 |
Target: 5'- -uGUCGUUAUAGACUUCau----UCa -3' miRNA: 3'- auCAGCAAUAUCUGAAGguaaauAGa -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 80972 | 0.66 | 1 |
Target: 5'- uUGGUCac-AUAGACUUC-AUUUAUCUu -3' miRNA: 3'- -AUCAGcaaUAUCUGAAGgUAAAUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 105099 | 0.7 | 0.999999 |
Target: 5'- uUAGUUaccGUAGACUUCUAUUUAUUa -3' miRNA: 3'- -AUCAGcaaUAUCUGAAGGUAAAUAGa -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 137721 | 0.7 | 0.999999 |
Target: 5'- uUAGU-GUUAUAGACUUCUAUUcacuUCUu -3' miRNA: 3'- -AUCAgCAAUAUCUGAAGGUAAau--AGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 74726 | 0.71 | 0.999996 |
Target: 5'- uUGGUUGcUAUAaAUUUCCAUUUGUCUu -3' miRNA: 3'- -AUCAGCaAUAUcUGAAGGUAAAUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 167600 | 0.73 | 0.999952 |
Target: 5'- uUAGUUGccAUAGAUUUCCAUUcAUCUu -3' miRNA: 3'- -AUCAGCaaUAUCUGAAGGUAAaUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 54288 | 0.73 | 0.999935 |
Target: 5'- uUAGUUG-UGUAGACUUCC-UUUAUUUc -3' miRNA: 3'- -AUCAGCaAUAUCUGAAGGuAAAUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 4727 | 0.78 | 0.995339 |
Target: 5'- uUAGUCGccacAGACUUCCAUUUAUUUc -3' miRNA: 3'- -AUCAGCaauaUCUGAAGGUAAAUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 48351 | 0.94 | 0.461691 |
Target: 5'- uUAGUUGUUAUAGACUUCUGUUUAUCUu -3' miRNA: 3'- -AUCAGCAAUAUCUGAAGGUAAAUAGA- -5' |
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28297 | 5' | -41.5 | NC_005902.1 | + | 181345 | 1.07 | 0.110457 |
Target: 5'- uUAGUCGUUAUAGACUUCCAUUUAUCUu -3' miRNA: 3'- -AUCAGCAAUAUCUGAAGGUAAAUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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