miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2830 3' -54 NC_001491.2 + 67596 0.66 0.965911
Target:  5'- cCGCagcACCGCgCUguuaACGUguCUACCGGGc -3'
miRNA:   3'- aGUGa--UGGCG-GA----UGCAguGAUGGCCU- -5'
2830 3' -54 NC_001491.2 + 123123 0.66 0.965911
Target:  5'- cCGCggGCgGCCcgGCGcCGCU-CCGGAg -3'
miRNA:   3'- aGUGa-UGgCGGa-UGCaGUGAuGGCCU- -5'
2830 3' -54 NC_001491.2 + 117837 0.66 0.962572
Target:  5'- -aGCUGCCGCUccgGCGcCGCUucccCCGGc -3'
miRNA:   3'- agUGAUGGCGGa--UGCaGUGAu---GGCCu -5'
2830 3' -54 NC_001491.2 + 14332 0.66 0.951208
Target:  5'- -aGCUGCCGCUUGg--CGCUGCCGu- -3'
miRNA:   3'- agUGAUGGCGGAUgcaGUGAUGGCcu -5'
2830 3' -54 NC_001491.2 + 141459 0.66 0.950794
Target:  5'- cCACgugACCGaggacucgcgcacCCUGCGcagggCGCUGCUGGAu -3'
miRNA:   3'- aGUGa--UGGC-------------GGAUGCa----GUGAUGGCCU- -5'
2830 3' -54 NC_001491.2 + 43044 0.67 0.942469
Target:  5'- uUUGCgGCCGCCgccCGUCcGCUuucGCCGGGa -3'
miRNA:   3'- -AGUGaUGGCGGau-GCAG-UGA---UGGCCU- -5'
2830 3' -54 NC_001491.2 + 65553 0.67 0.937741
Target:  5'- aCGCgguuuCCGCCauCGUCGCUccgcagcuACCGGGa -3'
miRNA:   3'- aGUGau---GGCGGauGCAGUGA--------UGGCCU- -5'
2830 3' -54 NC_001491.2 + 68506 0.67 0.937741
Target:  5'- uUCAggACCGUCUA-GUCACggagcgGCCGGu -3'
miRNA:   3'- -AGUgaUGGCGGAUgCAGUGa-----UGGCCu -5'
2830 3' -54 NC_001491.2 + 101321 0.67 0.932772
Target:  5'- -aGCU-CCGCC-GCGUCGCgGCUGGu -3'
miRNA:   3'- agUGAuGGCGGaUGCAGUGaUGGCCu -5'
2830 3' -54 NC_001491.2 + 106799 0.67 0.927025
Target:  5'- aCGC-GCCGCaggaaGCGUCACUGCCccuccucGGAg -3'
miRNA:   3'- aGUGaUGGCGga---UGCAGUGAUGG-------CCU- -5'
2830 3' -54 NC_001491.2 + 38491 0.67 0.922104
Target:  5'- aCGCUACCGCUaguaACGUCACgcuCCa-- -3'
miRNA:   3'- aGUGAUGGCGGa---UGCAGUGau-GGccu -5'
2830 3' -54 NC_001491.2 + 12717 0.71 0.766954
Target:  5'- cCACUGCgaCGUCUACGcCACgUAUCGGAc -3'
miRNA:   3'- aGUGAUG--GCGGAUGCaGUG-AUGGCCU- -5'
2830 3' -54 NC_001491.2 + 67896 0.72 0.737886
Target:  5'- gCGCUGCUGCugCUGCGUCGuCUGCUguGGAa -3'
miRNA:   3'- aGUGAUGGCG--GAUGCAGU-GAUGG--CCU- -5'
2830 3' -54 NC_001491.2 + 85383 0.72 0.697861
Target:  5'- gCAUUGCCGCCUauggGCGUCGCcguuaacuCUGGAu -3'
miRNA:   3'- aGUGAUGGCGGA----UGCAGUGau------GGCCU- -5'
2830 3' -54 NC_001491.2 + 113123 1.09 0.004497
Target:  5'- gUCACUACCGCCUACGUCACUACCGGAc -3'
miRNA:   3'- -AGUGAUGGCGGAUGCAGUGAUGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.