miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 8059 0.78 0.915781
Target:  5'- uUCGACGuugucGAUUgUAUCGAGUUCAGAUUu -3'
miRNA:   3'- -AGCUGU-----UUAAaAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8600 0.96 0.193434
Target:  5'- uUCGACAAAUUUUAcCGuGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCuCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8645 0.81 0.83056
Target:  5'- uUCGACAAAUcucaaUgagauaagauuagguUUAUCGAGUCCAGcCCg -3'
miRNA:   3'- -AGCUGUUUA-----A---------------AAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 8710 0.92 0.31462
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAaACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUcUGG- -5'
28301 3' -43.2 NC_005905.1 + 8755 0.92 0.32613
Target:  5'- uUCGACAaucucaaugagauaaGAUuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU---------------UUA----AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8819 1.05 0.063288
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8864 0.81 0.821025
Target:  5'- uUCGACAGAUcucaacaagauaagaUuagguUUAUCGAGUCCAGcCCg -3'
miRNA:   3'- -AGCUGUUUA---------------A-----AAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 8929 1.05 0.063288
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8974 0.92 0.32613
Target:  5'- uUCGACAaacucaaugagauaaGAUuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU---------------UUA----AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 9038 0.92 0.31462
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11077 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11142 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11207 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11272 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11337 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11402 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11467 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11532 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11597 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11662 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.