Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 3' | -43.2 | NC_005905.1 | + | 8059 | 0.78 | 0.915781 |
Target: 5'- uUCGACGuugucGAUUgUAUCGAGUUCAGAUUu -3' miRNA: 3'- -AGCUGU-----UUAAaAUAGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8600 | 0.96 | 0.193434 |
Target: 5'- uUCGACAAAUUUUAcCGuGUCCAGGCCg -3' miRNA: 3'- -AGCUGUUUAAAAUaGCuCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8645 | 0.81 | 0.83056 |
Target: 5'- uUCGACAAAUcucaaUgagauaagauuagguUUAUCGAGUCCAGcCCg -3' miRNA: 3'- -AGCUGUUUA-----A---------------AAUAGCUCAGGUCuGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8710 | 0.92 | 0.31462 |
Target: 5'- uUCGACAAAUUUUAcCGAGUCCAaACCg -3' miRNA: 3'- -AGCUGUUUAAAAUaGCUCAGGUcUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8755 | 0.92 | 0.32613 |
Target: 5'- uUCGACAaucucaaugagauaaGAUuaggUUUAUCGAGUCCAGGCCg -3' miRNA: 3'- -AGCUGU---------------UUA----AAAUAGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8819 | 1.05 | 0.063288 |
Target: 5'- uUCGACAAAUUUUAcCGAGUCCAGGCCg -3' miRNA: 3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8864 | 0.81 | 0.821025 |
Target: 5'- uUCGACAGAUcucaacaagauaagaUuagguUUAUCGAGUCCAGcCCg -3' miRNA: 3'- -AGCUGUUUA---------------A-----AAUAGCUCAGGUCuGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8929 | 1.05 | 0.063288 |
Target: 5'- uUCGACAAAUUUUAcCGAGUCCAGGCCg -3' miRNA: 3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8974 | 0.92 | 0.32613 |
Target: 5'- uUCGACAaacucaaugagauaaGAUuaggUUUAUCGAGUCCAGGCCg -3' miRNA: 3'- -AGCUGU---------------UUA----AAAUAGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 9038 | 0.92 | 0.31462 |
Target: 5'- uUCGACAAAUUUUAcCGAGUCCAGGUCg -3' miRNA: 3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11077 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11142 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11207 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11272 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11337 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11402 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11467 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11532 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11597 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 11662 | 0.84 | 0.67721 |
Target: 5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3' miRNA: 3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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