Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 20050 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17802 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19655 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19875 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 22049 | 1.11 | 0.049713 |
Target: 5'- gCCAAGUUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 22139 | 1.11 | 0.049713 |
Target: 5'- gCCAAGUUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17847 | 1.1 | 0.054662 |
Target: 5'- gCCGAGUUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19765 | 1.06 | 0.084786 |
Target: 5'- gCCAAGCUAGCcUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGaAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8699 | 1.06 | 0.093052 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8808 | 1.06 | 0.093052 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 9027 | 1.06 | 0.093052 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19610 | 1 | 0.175734 |
Target: 5'- gCCAAGCUAGCUUC-ACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGcUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21824 | 1 | 0.175734 |
Target: 5'- aCCAAGUUAGCUUCGACAAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17233 | 1 | 0.180979 |
Target: 5'- gCCGAGUUAGCUUCGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 22004 | 1 | 0.191886 |
Target: 5'- aCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 9072 | 1 | 0.191886 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUcucgAUCa -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaa-UAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20005 | 0.99 | 0.203366 |
Target: 5'- gCCAAGCUAGCUUCGACAAA---UAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUaaaAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21959 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21914 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21869 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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