Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 8589 | 0.84 | 0.79766 |
Target: 5'- aCCGAuuUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUcgAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8634 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8699 | 1.06 | 0.093052 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8744 | 0.91 | 0.489895 |
Target: 5'- gCCAAGCUAGCUUCGACAaucucaaugagauaaGAUuaggUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGU---------------UUA----AAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8784 | 0.68 | 1 |
Target: 5'- cCCAAGCcgGGCUggacUCGAUAAAccuaaucUUAUCu -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUGUUUaa-----AAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8808 | 1.06 | 0.093052 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8829 | 0.66 | 1 |
Target: 5'- cCCAAGCcGGUUUgGACucGGUaaaaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCGAAgCUGu-UUA----AAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8853 | 0.95 | 0.326348 |
Target: 5'- gCCAAGCUAGCUUCGACAGAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8920 | 0.89 | 0.565765 |
Target: 5'- -aGAGUUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- ggUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8963 | 0.93 | 0.400903 |
Target: 5'- gCCAAGCUAGCUUCGACAAAc------ -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUaaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 9003 | 0.68 | 1 |
Target: 5'- cCCAAGCcgGGCUggacUCGAUAAAccuaaucUUAUCu -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUGUUUaa-----AAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 9027 | 1.06 | 0.093052 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 9072 | 1 | 0.191886 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUcucgAUCa -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaa-UAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 10758 | 0.83 | 0.874092 |
Target: 5'- -uGAGUUAGCUUCGACGAAa-UUAUCa -3' miRNA: 3'- ggUUCGAUCGAAGCUGUUUaaAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11050 | 0.81 | 0.925839 |
Target: 5'- aCCAcGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUuCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11115 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11180 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11245 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11310 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11375 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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