miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 17907 0.89 0.565765
Target:  5'- gUCAAGUUAGCUUUGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 11310 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11375 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11440 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11505 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11570 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11635 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11700 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11765 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11245 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11180 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11115 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 8808 1.06 0.093052
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 9027 1.06 0.093052
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 9072 1 0.191886
Target:  5'- gCCAAGCUAGCUUCGACAAAUcucgAUCa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaa-UAG- -5'
28301 5' -40.6 NC_005905.1 + 8853 0.95 0.326348
Target:  5'- gCCAAGCUAGCUUCGACAGAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 8634 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 8963 0.93 0.400903
Target:  5'- gCCAAGCUAGCUUCGACAAAc------ -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUaaaauag -5'
28301 5' -40.6 NC_005905.1 + 11830 0.92 0.46347
Target:  5'- gCCAAGCUAGCUUCGAUAAGUacgggUGUUg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaa---AUAG- -5'
28301 5' -40.6 NC_005905.1 + 8744 0.91 0.489895
Target:  5'- gCCAAGCUAGCUUCGACAaucucaaugagauaaGAUuaggUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGU---------------UUA----AAAUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.