miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 17042 0.66 1
Target:  5'- gCCGGGCUGGacUCGAUAAAcauaaucUUAUCu -3'
miRNA:   3'- -GGUUCGAUCgaAGCUGUUUaa-----AAUAG- -5'
28301 5' -40.6 NC_005905.1 + 21924 0.66 1
Target:  5'- aCCGAaCUAGacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUcGAUCgaAGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 22179 0.69 0.999996
Target:  5'- cCCAGGCcGGCUUgGGuCGAAUga-GUCg -3'
miRNA:   3'- -GGUUCGaUCGAAgCU-GUUUAaaaUAG- -5'
28301 5' -40.6 NC_005905.1 + 19400 0.7 0.999983
Target:  5'- uCCAGGCUAGCUugguccaagccggccUgGACucgauaaaccuAAUUUUAUCu -3'
miRNA:   3'- -GGUUCGAUCGA---------------AgCUGu----------UUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19501 0.7 0.999962
Target:  5'- aCCAAGCUAGCcUgGAUAAAa------ -3'
miRNA:   3'- -GGUUCGAUCGaAgCUGUUUaaaauag -5'
28301 5' -40.6 NC_005905.1 + 61112 0.71 0.999903
Target:  5'- aCAuauAGCaauaGGCUUCGGCGAugUUUAUCa -3'
miRNA:   3'- gGU---UCGa---UCGAAGCUGUUuaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19920 0.71 0.99987
Target:  5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19525 0.71 0.99987
Target:  5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19745 0.71 0.99987
Target:  5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17717 0.74 0.998739
Target:  5'- cCCAAGCcGGCcuaaacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19635 0.74 0.998739
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17672 0.76 0.990623
Target:  5'- uCCAAGCcGGCcuggaUUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCG-----AAGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19480 0.8 0.948318
Target:  5'- cCCAAGCcGGCUuggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGA-----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17912 0.8 0.943183
Target:  5'- gCCAAGCUAGCUcUGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAaGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17188 0.8 0.937727
Target:  5'- gCCAAGCUAGCUUCaACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGcUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11050 0.81 0.925839
Target:  5'- aCCAcGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUuCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 10758 0.83 0.874092
Target:  5'- -uGAGUUAGCUUCGACGAAa-UUAUCa -3'
miRNA:   3'- ggUUCGAUCGAAGCUGUUUaaAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 8589 0.84 0.79766
Target:  5'- aCCGAuuUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUcgAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 21779 0.88 0.613246
Target:  5'- gCCAAGUUAGCUUCGACGAAgcu--UCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUaaaauAG- -5'
28301 5' -40.6 NC_005905.1 + 19830 0.89 0.589421
Target:  5'- gCCAAGUUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.