Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 17042 | 0.66 | 1 |
Target: 5'- gCCGGGCUGGacUCGAUAAAcauaaucUUAUCu -3' miRNA: 3'- -GGUUCGAUCgaAGCUGUUUaa-----AAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21924 | 0.66 | 1 |
Target: 5'- aCCGAaCUAGacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUcGAUCgaAGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 22179 | 0.69 | 0.999996 |
Target: 5'- cCCAGGCcGGCUUgGGuCGAAUga-GUCg -3' miRNA: 3'- -GGUUCGaUCGAAgCU-GUUUAaaaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19400 | 0.7 | 0.999983 |
Target: 5'- uCCAGGCUAGCUugguccaagccggccUgGACucgauaaaccuAAUUUUAUCu -3' miRNA: 3'- -GGUUCGAUCGA---------------AgCUGu----------UUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19501 | 0.7 | 0.999962 |
Target: 5'- aCCAAGCUAGCcUgGAUAAAa------ -3' miRNA: 3'- -GGUUCGAUCGaAgCUGUUUaaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 61112 | 0.71 | 0.999903 |
Target: 5'- aCAuauAGCaauaGGCUUCGGCGAugUUUAUCa -3' miRNA: 3'- gGU---UCGa---UCGAAGCUGUUuaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19920 | 0.71 | 0.99987 |
Target: 5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19525 | 0.71 | 0.99987 |
Target: 5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19745 | 0.71 | 0.99987 |
Target: 5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17717 | 0.74 | 0.998739 |
Target: 5'- cCCAAGCcGGCcuaaacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19635 | 0.74 | 0.998739 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17672 | 0.76 | 0.990623 |
Target: 5'- uCCAAGCcGGCcuggaUUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCG-----AAGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19480 | 0.8 | 0.948318 |
Target: 5'- cCCAAGCcGGCUuggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCGA-----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17912 | 0.8 | 0.943183 |
Target: 5'- gCCAAGCUAGCUcUGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAaGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17188 | 0.8 | 0.937727 |
Target: 5'- gCCAAGCUAGCUUCaACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGcUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11050 | 0.81 | 0.925839 |
Target: 5'- aCCAcGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUuCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 10758 | 0.83 | 0.874092 |
Target: 5'- -uGAGUUAGCUUCGACGAAa-UUAUCa -3' miRNA: 3'- ggUUCGAUCGAAGCUGUUUaaAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8589 | 0.84 | 0.79766 |
Target: 5'- aCCGAuuUAGCUUCGACAAAUUUUAc- -3' miRNA: 3'- -GGUUcgAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21779 | 0.88 | 0.613246 |
Target: 5'- gCCAAGUUAGCUUCGACGAAgcu--UCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUaaaauAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19830 | 0.89 | 0.589421 |
Target: 5'- gCCAAGUUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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