Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 19566 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17692 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17518 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17408 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17298 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20115 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17343 | 0.95 | 0.326348 |
Target: 5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17453 | 0.95 | 0.326348 |
Target: 5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17563 | 0.95 | 0.326348 |
Target: 5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 8853 | 0.95 | 0.326348 |
Target: 5'- gCCAAGCUAGCUUCGACAGAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17627 | 0.96 | 0.309392 |
Target: 5'- aCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17757 | 0.96 | 0.309392 |
Target: 5'- aCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21869 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21914 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 22094 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21959 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20005 | 0.99 | 0.203366 |
Target: 5'- gCCAAGCUAGCUUCGACAAA---UAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUaaaAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 9072 | 1 | 0.191886 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUcucgAUCa -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaa-UAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 22004 | 1 | 0.191886 |
Target: 5'- aCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17233 | 1 | 0.180979 |
Target: 5'- gCCGAGUUAGCUUCGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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