miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 8577 0.69 0.410631
Target:  5'- aGCaCGGCUUGGaCCGAuuUAGCUUCGa -3'
miRNA:   3'- cCG-GCCGAACCcGGUUcgAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8622 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8689 0.96 0.005642
Target:  5'- -cCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8730 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 8734 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8795 0.68 0.494611
Target:  5'- aGCUaGCUUGGcccaaGCCGGGCUGGaCUCGa -3'
miRNA:   3'- cCGGcCGAACC-----CGGUUCGAUCgGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8796 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8841 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8904 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 8908 0.82 0.061079
Target:  5'- -cCCGGCUUGGGCaGAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGgUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8949 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 8951 0.94 0.007073
Target:  5'- aGGCCGGCUUGaGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACcCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 9015 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 9060 1.02 0.002095
Target:  5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 9124 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 9127 0.7 0.359803
Target:  5'- -cCCGGCUUGGGCaGAGUUAGCa--- -3'
miRNA:   3'- ccGGCCGAACCCGgUUCGAUCGgagc -5'
28302 3' -59.7 NC_005905.1 + 11105 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11170 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11235 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11300 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.