Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 3' | -59.7 | NC_005905.1 | + | 8577 | 0.69 | 0.410631 |
Target: 5'- aGCaCGGCUUGGaCCGAuuUAGCUUCGa -3' miRNA: 3'- cCG-GCCGAACCcGGUUcgAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8622 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8689 | 0.96 | 0.005642 |
Target: 5'- -cCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8730 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8734 | 0.96 | 0.005331 |
Target: 5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8795 | 0.68 | 0.494611 |
Target: 5'- aGCUaGCUUGGcccaaGCCGGGCUGGaCUCGa -3' miRNA: 3'- cCGGcCGAACC-----CGGUUCGAUCgGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8796 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8841 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8904 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8908 | 0.82 | 0.061079 |
Target: 5'- -cCCGGCUUGGGCaGAGUUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGgUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8949 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8951 | 0.94 | 0.007073 |
Target: 5'- aGGCCGGCUUGaGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACcCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 9015 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 9060 | 1.02 | 0.002095 |
Target: 5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 9124 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 9127 | 0.7 | 0.359803 |
Target: 5'- -cCCGGCUUGGGCaGAGUUAGCa--- -3' miRNA: 3'- ccGGCCGAACCCGgUUCGAUCGgagc -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 11105 | 0.96 | 0.005331 |
Target: 5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 11170 | 0.96 | 0.005331 |
Target: 5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 11235 | 0.96 | 0.005331 |
Target: 5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 11300 | 0.96 | 0.005331 |
Target: 5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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