miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 49354 0.67 0.504435
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 8795 0.68 0.494611
Target:  5'- aGCUaGCUUGGcccaaGCCGGGCUGGaCUCGa -3'
miRNA:   3'- cCGGcCGAACC-----CGGUUCGAUCgGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8577 0.69 0.410631
Target:  5'- aGCaCGGCUUGGaCCGAuuUAGCUUCGa -3'
miRNA:   3'- cCG-GCCGAACCcGGUUcgAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19484 0.69 0.399244
Target:  5'- aGCCGGCUUGGacucgauaaaauuuGUCgAAGCUAGCUUgGc -3'
miRNA:   3'- cCGGCCGAACC--------------CGG-UUCGAUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 49174 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49399 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49309 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 9127 0.7 0.359803
Target:  5'- -cCCGGCUUGGGCaGAGUUAGCa--- -3'
miRNA:   3'- ccGGCCGAACCCGgUUCGAUCGgagc -5'
28302 3' -59.7 NC_005905.1 + 49084 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49129 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49264 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22176 0.7 0.343865
Target:  5'- aGGCCGGCUUGGGUCGAaUgAGUCg-- -3'
miRNA:   3'- -CCGGCCGAACCCGGUUcGaUCGGagc -5'
28302 3' -59.7 NC_005905.1 + 49219 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19668 0.71 0.299147
Target:  5'- aGGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19403 0.71 0.299147
Target:  5'- aGGCUaGCUUGGuCCAAGCcGGCCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17895 0.72 0.259063
Target:  5'- aGGCCGGUUUcuGUCAAGUUAGCUUUGa -3'
miRNA:   3'- -CCGGCCGAAccCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49447 0.73 0.229104
Target:  5'- uGGaCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- -CC-GGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17463 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17573 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17353 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.