miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 5' -61.5 NC_005905.1 + 22073 0.66 0.477891
Target:  5'- uUCGAc-CCAaGCCGGCcUGGGCUAGa -3'
miRNA:   3'- uAGCUcaGGUcCGGCCGaACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 49366 0.66 0.421668
Target:  5'- uAUCaAGUCUAGaCCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 49276 0.67 0.395091
Target:  5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 49096 0.67 0.395091
Target:  5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 49141 0.67 0.395091
Target:  5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 49231 0.67 0.395091
Target:  5'- uAUCaAGUCUAGaCCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17869 0.68 0.345295
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17934 0.69 0.286173
Target:  5'- ---uAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uagcUCAGGUCCGGCCGAACCCggUU- -5'
28302 5' -61.5 NC_005905.1 + 17887 0.7 0.272697
Target:  5'- -cCGAGUUCAGGCCGGUUUcuGUCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAAccCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 22159 0.71 0.229531
Target:  5'- -aUGAGUCgAGGCCuGCUUuGGCCAAg -3'
miRNA:   3'- uaGCUCAGgUCCGGcCGAAcCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 21744 0.72 0.192279
Target:  5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3'
miRNA:   3'- uaGCUCAgGUCCGGCCGAACcCGGUu -5'
28302 5' -61.5 NC_005905.1 + 17930 0.75 0.119934
Target:  5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagcUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17585 0.76 0.096682
Target:  5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17475 0.76 0.096682
Target:  5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17365 0.76 0.096682
Target:  5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 21844 0.78 0.06776
Target:  5'- -cCGAGUCUAGGCCGGCUUGaaCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACccGGUU- -5'
28302 5' -61.5 NC_005905.1 + 22069 0.8 0.047264
Target:  5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17145 0.8 0.04997
Target:  5'- uAUCGAGUCCAGcCCGGCUUGaGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 21799 0.81 0.04111
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAAcCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 22186 0.82 0.033794
Target:  5'- uAUCuAGcCCAGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGcUCaGGUCCGGCCGAACCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.