miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 5' -61.5 NC_005905.1 + 8786 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 19897 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 19962 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17714 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 19742 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 20137 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 9005 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 19787 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8833 1 0.001575
Target:  5'- -cCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 20072 0.99 0.001766
Target:  5'- uAUCGAGUCCAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 21889 0.96 0.003035
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 21979 0.96 0.003035
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 21934 0.96 0.003035
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 22116 0.96 0.003123
Target:  5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 9052 0.95 0.003401
Target:  5'- -cCGAGUCCAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 17824 0.95 0.003401
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8614 0.94 0.004653
Target:  5'- -cCGuGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCuCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 19588 0.93 0.005214
Target:  5'- uAUCGAGUCCAaGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUcCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 19632 0.92 0.006011
Target:  5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 20027 0.92 0.006011
Target:  5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.