miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 5' -61.5 NC_005905.1 + 8724 0.83 0.031949
Target:  5'- -cCGAGUCCAaaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUccGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11485 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11550 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11615 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11680 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11745 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11810 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8943 0.88 0.011556
Target:  5'- -cCGAGUCCAGGCCGGCUUGaGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACcCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8896 0.83 0.029367
Target:  5'- uAUCGAGUCCAGcCCGGCUUGGGCa-- -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAACCCGguu -5'
28302 5' -61.5 NC_005905.1 + 11420 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11355 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11290 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 9005 1.04 0.000818
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8833 1 0.001575
Target:  5'- -cCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 9052 0.95 0.003401
Target:  5'- -cCGAGUCCAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8614 0.94 0.004653
Target:  5'- -cCGuGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCuCAGGUCCGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 8677 0.92 0.006363
Target:  5'- uAUCGAGUCCAGcCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11095 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11160 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5'
28302 5' -61.5 NC_005905.1 + 11225 0.88 0.011556
Target:  5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.