Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 5' | -61.5 | NC_005905.1 | + | 19632 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19677 | 0.87 | 0.013699 |
Target: 5'- uAUCGAGUCCAGGUCGuCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCcGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19742 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19787 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19852 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19897 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19962 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20027 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20072 | 0.99 | 0.001766 |
Target: 5'- uAUCGAGUCCAGGUCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20137 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20197 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21744 | 0.72 | 0.192279 |
Target: 5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3' miRNA: 3'- uaGCUCAgGUCCGGCCGAACcCGGUu -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21799 | 0.81 | 0.04111 |
Target: 5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21844 | 0.78 | 0.06776 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGaaCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACccGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21889 | 0.96 | 0.003035 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21934 | 0.96 | 0.003035 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21979 | 0.96 | 0.003035 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22069 | 0.8 | 0.047264 |
Target: 5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22073 | 0.66 | 0.477891 |
Target: 5'- uUCGAc-CCAaGCCGGCcUGGGCUAGa -3' miRNA: 3'- uAGCUcaGGUcCGGCCGaACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22116 | 0.96 | 0.003123 |
Target: 5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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