Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28303 | 3' | -50.7 | NC_005905.1 | + | 8585 | 0.71 | 0.740087 |
Target: 5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCcGGUUcgAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8630 | 1.08 | 0.004822 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8695 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8740 | 0.99 | 0.020003 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACA-AUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUuUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8804 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8849 | 1.08 | 0.004678 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAGAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8914 | 0.86 | 0.132127 |
Target: 5'- uUGGGCaGAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGgUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8959 | 0.86 | 0.132127 |
Target: 5'- uUGaGCCAAGCUAGCUUCGACAAAcUCa -3' miRNA: 3'- -ACcCGGUUCGAUCGAAGCUGUUU-AGa -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 9023 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 9068 | 1.08 | 0.004822 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11046 | 0.74 | 0.574106 |
Target: 5'- gUGcaCCAcGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACccGGUuCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11111 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11176 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11241 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11306 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11371 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11436 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11501 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11566 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11631 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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