miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 5' -54 NC_005905.1 + 8778 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17657 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19905 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17722 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19795 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19531 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20145 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19970 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8997 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20080 1 0.007903
Target:  5'- aUUAGGUUUAUCGAGUCCAGGUCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8669 0.92 0.029806
Target:  5'- aUUAGGUUUAUCGAGUCCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8888 0.92 0.029806
Target:  5'- aUUAGGUUUAUCGAGUCCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19745 0.88 0.056557
Target:  5'- ----uUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19685 0.87 0.065324
Target:  5'- aUUAGGUUUAUCGAGUCCAGGUCGuCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCcGA- -5'
28303 5' -54 NC_005905.1 + 17373 0.86 0.069187
Target:  5'- aUUAGGUUUAUCGAGUUCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17483 0.86 0.069187
Target:  5'- aUUAGGUUUAUCGAGUUCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17593 0.86 0.069187
Target:  5'- aUUAGGUUUAUCGAGUUCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17263 0.8 0.188767
Target:  5'- aUUAuGUUUAUCGAGUCCAGcCCGGCUu -3'
miRNA:   3'- -AAUcCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17153 0.8 0.188767
Target:  5'- aUUAuGUUUAUCGAGUCCAGcCCGGCUu -3'
miRNA:   3'- -AAUcCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8828 0.79 0.204455
Target:  5'- ----uUUUAcCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUaGCUCAGGUCCGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.