miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 5' -54 NC_005905.1 + 19855 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19635 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20030 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19591 0.76 0.331355
Target:  5'- ----uUUUAUCGAGUCCAaGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUcCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17782 0.77 0.293108
Target:  5'- ----uUUUAUCGAaUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUcAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21987 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21942 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21897 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21852 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17877 0.78 0.239226
Target:  5'- aUUAGGUUUAUCGAGUUUAGcUCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17827 0.78 0.227117
Target:  5'- ----uUUUAUCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 22119 0.79 0.20993
Target:  5'- ----uUUUAUCGAGUCUAGGCCGGUUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8938 0.79 0.204455
Target:  5'- ----uUUUAcCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8828 0.79 0.204455
Target:  5'- ----uUUUAcCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17153 0.8 0.188767
Target:  5'- aUUAuGUUUAUCGAGUCCAGcCCGGCUu -3'
miRNA:   3'- -AAUcCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17263 0.8 0.188767
Target:  5'- aUUAuGUUUAUCGAGUCCAGcCCGGCUu -3'
miRNA:   3'- -AAUcCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17593 0.86 0.069187
Target:  5'- aUUAGGUUUAUCGAGUUCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17483 0.86 0.069187
Target:  5'- aUUAGGUUUAUCGAGUUCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17373 0.86 0.069187
Target:  5'- aUUAGGUUUAUCGAGUUCAGcCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19685 0.87 0.065324
Target:  5'- aUUAGGUUUAUCGAGUCCAGGUCGuCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.