Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28304 | 3' | -55.2 | NC_005905.1 | + | 11756 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11691 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11626 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11621 | 0.68 | 0.721987 |
Target: 5'- -aUCGGCUUGGauuuauCgAAGCUAGCUUgGc -3' miRNA: 3'- ccAGCCGAACCc-----GgUUCGAUCGAAgC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11561 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11496 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11431 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11366 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11301 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11236 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11171 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11106 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 9128 | 0.71 | 0.510599 |
Target: 5'- --cCGGCUUGGGCaGAGUUAGCa--- -3' miRNA: 3'- ccaGCCGAACCCGgUUCGAUCGaagc -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 9060 | 1.12 | 0.001105 |
Target: 5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 9015 | 1.04 | 0.003754 |
Target: 5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8951 | 0.91 | 0.028524 |
Target: 5'- aGGcCGGCUUGaGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8909 | 0.84 | 0.088687 |
Target: 5'- --cCGGCUUGGGCaGAGUUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGgUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8841 | 1.04 | 0.003754 |
Target: 5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8796 | 1.04 | 0.003754 |
Target: 5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8735 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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