miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 3' -55.2 NC_005905.1 + 17132 0.67 0.762692
Target:  5'- --cCGGCUUGaGCCGAGUUAGUUaUGg -3'
miRNA:   3'- ccaGCCGAACcCGGUUCGAUCGAaGC- -5'
28304 3' -55.2 NC_005905.1 + 17895 0.67 0.742552
Target:  5'- aGGcCGGUUUcuGUCAAGUUAGCUUUGa -3'
miRNA:   3'- -CCaGCCGAAccCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 49038 0.67 0.791923
Target:  5'- --cCGGCUUGaGCCGAcCgAGCUUCGg -3'
miRNA:   3'- ccaGCCGAACcCGGUUcGaUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11621 0.68 0.721987
Target:  5'- -aUCGGCUUGGauuuauCgAAGCUAGCUUgGc -3'
miRNA:   3'- ccAGCCGAACCc-----GgUUCGAUCGAAgC- -5'
28304 3' -55.2 NC_005905.1 + 8572 0.71 0.510599
Target:  5'- cGGUuagcaCGGCUUGGaCCGAuuUAGCUUCGa -3'
miRNA:   3'- -CCA-----GCCGAACCcGGUUcgAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 9128 0.71 0.510599
Target:  5'- --cCGGCUUGGGCaGAGUUAGCa--- -3'
miRNA:   3'- ccaGCCGAACCCGgUUCGAUCGaagc -5'
28304 3' -55.2 NC_005905.1 + 22014 0.74 0.378194
Target:  5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccAGCCGAACccGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19513 0.77 0.251336
Target:  5'- aGGcCGGCUUGGaCCAAGCUAGCc--- -3'
miRNA:   3'- -CCaGCCGAACCcGGUUCGAUCGaagc -5'
28304 3' -55.2 NC_005905.1 + 17462 0.79 0.189463
Target:  5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17352 0.79 0.189463
Target:  5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17572 0.79 0.189463
Target:  5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 22166 0.8 0.17694
Target:  5'- gGGUCGaaugagucgaggccuGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCAGC---------------CGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21836 0.8 0.170506
Target:  5'- aGGcCGGCUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACccGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8909 0.84 0.088687
Target:  5'- --cCGGCUUGGGCaGAGUUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGgUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17857 0.85 0.079324
Target:  5'- -cUCGGCUUGuGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccAGCCGAACcCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17924 0.85 0.077136
Target:  5'- aGUcCGGUUUGGGCCAAGCUAGCUcUGa -3'
miRNA:   3'- cCA-GCCGAACCCGGUUCGAUCGAaGC- -5'
28304 3' -55.2 NC_005905.1 + 22061 0.87 0.056588
Target:  5'- aGGcCGGCUUGaGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21791 0.88 0.049105
Target:  5'- aGGcCGGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17639 0.91 0.028524
Target:  5'- aGGcCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCcGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8951 0.91 0.028524
Target:  5'- aGGcCGGCUUGaGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.