miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 3' -55.2 NC_005905.1 + 9060 1.12 0.001105
Target:  5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 20062 1.12 0.001105
Target:  5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17530 1.08 0.002037
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17310 1.08 0.002037
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17420 1.08 0.002037
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17200 1.05 0.003153
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGc -5'
28304 3' -55.2 NC_005905.1 + 19952 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19732 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19887 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8622 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8796 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8841 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17814 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 20127 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 9015 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17704 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21971 1 0.007542
Target:  5'- aGGcCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21881 1 0.007542
Target:  5'- aGGcCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 21926 1 0.007542
Target:  5'- aGGcCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11561 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.