miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 3' -55.2 NC_005905.1 + 8909 0.84 0.088687
Target:  5'- --cCGGCUUGGGCaGAGUUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGgUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11431 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11496 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11561 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11626 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11691 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11756 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11821 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8951 0.91 0.028524
Target:  5'- aGGcCGGCUUGaGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11366 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11301 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11236 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8622 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8796 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8841 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 9015 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8690 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8735 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11106 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11171 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.