miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 3' -55.2 NC_005905.1 + 8951 0.91 0.028524
Target:  5'- aGGcCGGCUUGaGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 20184 0.92 0.025425
Target:  5'- --cCGGCUUGGGCCAAGCUAGCcUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGaAGC- -5'
28304 3' -55.2 NC_005905.1 + 17242 0.95 0.016978
Target:  5'- --cCGGCUUGGGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19839 0.95 0.015568
Target:  5'- --cCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 22106 0.95 0.015124
Target:  5'- aGGcCGGUUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 19777 0.97 0.01235
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCcUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGaAGC- -5'
28304 3' -55.2 NC_005905.1 + 19619 0.97 0.011997
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGc -5'
28304 3' -55.2 NC_005905.1 + 19667 0.99 0.008977
Target:  5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCcGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11171 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11756 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11821 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11561 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11496 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8690 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11431 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11366 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11301 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11236 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 8735 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11691 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.