miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 5' -59.4 NC_005905.1 + 8614 0.92 0.008836
Target:  5'- -cCGuGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCuCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 8677 0.96 0.004831
Target:  5'- uAUCGAGUCCAGcCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 8724 0.89 0.014804
Target:  5'- -cCGAGUCCAaACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUcUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 8786 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 8833 0.99 0.002962
Target:  5'- -cCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 8896 0.87 0.022726
Target:  5'- uAUCGAGUCCAGcCCGGCUUGGGCa-- -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAACCCGguu -5'
28304 5' -59.4 NC_005905.1 + 8943 0.87 0.022087
Target:  5'- -cCGAGUCCAGGCCGGCUUGaGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 9005 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 9052 0.89 0.014804
Target:  5'- -cCGAGUCCAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11095 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11160 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11225 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11290 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11355 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11420 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11485 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11550 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11615 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11680 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 11745 1 0.002492
Target:  5'- -cCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.