miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 5' -59.4 NC_005905.1 + 21744 0.7 0.345057
Target:  5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3'
miRNA:   3'- uaGCUCAgGUCUGGCCGAACcCGGUu -5'
28304 5' -59.4 NC_005905.1 + 20197 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20137 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20072 0.93 0.007654
Target:  5'- uAUCGAGUCCAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20027 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19962 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19897 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19852 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19787 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19742 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19677 0.81 0.059445
Target:  5'- uAUCGAGUCCAGGUCGuCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCcGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19632 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19588 0.94 0.007022
Target:  5'- uAUCGAGUCCAaGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUcUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19523 0.91 0.011439
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCcGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17934 0.67 0.488989
Target:  5'- ---uAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uagcUCAGGUCUGGCCGAACCCggUU- -5'
28304 5' -59.4 NC_005905.1 + 17930 0.79 0.087687
Target:  5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagcUCAGGUCuGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17887 0.68 0.469393
Target:  5'- -cCGAGUUCAGGCCGGUUUcuGUCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAAccCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17869 0.7 0.321676
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17824 0.94 0.006441
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17779 0.81 0.062862
Target:  5'- uAUCGAaUCCAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGCUcAGGUCUGGCCGAACCcGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.