Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28307 | 3' | -58.2 | NC_005905.1 | + | 49266 | 1.09 | 0.000907 |
Target: 5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 49311 | 1.08 | 0.000988 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 49356 | 1.06 | 0.001516 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGc -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 49401 | 1.08 | 0.000988 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 49446 | 1.08 | 0.001046 |
Target: 5'- gGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 49490 | 0.92 | 0.015658 |
Target: 5'- aGACCGGCUUGAGCCuACCGGGUUUCGg -3' miRNA: 3'- -CUGGCCGAACUCGGuUGGCUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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