Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28307 | 3' | -58.2 | NC_005905.1 | + | 17091 | 0.66 | 0.671098 |
Target: 5'- aGCUaGCUUGgcccaAGCCAACCuGGUCUCGa -3' miRNA: 3'- cUGGcCGAAC-----UCGGUUGGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11818 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 8622 | 0.84 | 0.057013 |
Target: 5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 8796 | 0.84 | 0.057013 |
Target: 5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 8841 | 0.84 | 0.057013 |
Target: 5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 9015 | 0.84 | 0.057013 |
Target: 5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 8733 | 0.81 | 0.088536 |
Target: 5'- aACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- cUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 8689 | 0.78 | 0.139841 |
Target: 5'- -cCCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 9062 | 0.75 | 0.228306 |
Target: 5'- -gUCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11753 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11688 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11623 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11103 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11168 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11233 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11298 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11363 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11428 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11493 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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28307 | 3' | -58.2 | NC_005905.1 | + | 11558 | 0.85 | 0.048255 |
Target: 5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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