miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28307 3' -58.2 NC_005905.1 + 8689 0.78 0.139841
Target:  5'- -cCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 8733 0.81 0.088536
Target:  5'- aACCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- cUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 19577 0.81 0.081572
Target:  5'- aGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- cUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 21926 0.82 0.079369
Target:  5'- aGGCCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 21971 0.82 0.079369
Target:  5'- aGGCCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 21881 0.82 0.079369
Target:  5'- aGGCCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 19622 0.82 0.073097
Target:  5'- aGACCGGCUUGGGCCAAgCuAGCUUCa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGc -5'
28307 3' -58.2 NC_005905.1 + 19842 0.83 0.067302
Target:  5'- aGACCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 22061 0.83 0.061951
Target:  5'- aGGCCGGCUUGAGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 9015 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 8796 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 8622 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 19952 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 20127 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 19887 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 17704 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 8841 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 17814 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 19732 0.84 0.057013
Target:  5'- aGGCCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28307 3' -58.2 NC_005905.1 + 11428 0.85 0.048255
Target:  5'- aGACCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.