miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28307 5' -53.5 NC_005905.1 + 21799 0.82 0.136122
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 20072 0.82 0.132349
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19588 0.83 0.118206
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaucUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 21744 0.83 0.10548
Target:  5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUCAgAUCUGGCCGAACUCGGUu -5'
28307 5' -53.5 NC_005905.1 + 17255 0.84 0.091382
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8677 0.85 0.083801
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 21844 0.86 0.072483
Target:  5'- -cCGAGUCUAGGCCGGCUUGAaCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17145 0.86 0.070402
Target:  5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8833 0.88 0.051004
Target:  5'- -cCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11810 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11745 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11680 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11615 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11225 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11550 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11160 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11355 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11420 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11485 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11290 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.