miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28308 3' -58.2 NC_005905.1 + 17201 0.66 0.671098
Target:  5'- aGCUaGCUUGgcccaAGCCAACCuGGUCUCGa -3'
miRNA:   3'- cUGGcCGAAC-----UCGGUUGGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17091 0.66 0.671098
Target:  5'- aGCUaGCUUGgcccaAGCCAACCuGGUCUCGa -3'
miRNA:   3'- cUGGcCGAAC-----UCGGUUGGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17421 0.66 0.671098
Target:  5'- aGCUaGCUUGgcccaAGCCAACCuGGUCUCGa -3'
miRNA:   3'- cUGGcCGAAC-----UCGGUUGGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17311 0.66 0.671098
Target:  5'- aGCUaGCUUGgcccaAGCCAACCuGGUCUCGa -3'
miRNA:   3'- cUGGcCGAAC-----UCGGUUGGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17859 0.67 0.587236
Target:  5'- aGCuCGGCUUGuGCCGAgUuAGCUUCGa -3'
miRNA:   3'- cUG-GCCGAACuCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 19513 0.7 0.410939
Target:  5'- aGGCCGGCUUGGaCCAAgCuAGCCUgGa -3'
miRNA:   3'- -CUGGCCGAACUcGGUUgGcUCGGAgC- -5'
28308 3' -58.2 NC_005905.1 + 21836 0.72 0.343698
Target:  5'- aGGCCGGCUUGAaCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUcGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17200 0.72 0.320608
Target:  5'- aGGuuGGCUUGGGCCAAgCuAGCUUCa -3'
miRNA:   3'- -CUggCCGAACUCGGUUgGcUCGGAGc -5'
28308 3' -58.2 NC_005905.1 + 17769 0.72 0.320608
Target:  5'- aGGCCGGCUUGGaCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUcGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17639 0.72 0.320608
Target:  5'- aGGCCGGCUUGGaCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUcGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 22176 0.73 0.313174
Target:  5'- aGGCCGGCUUGGGUCGAaugagUCGAGgCCUg- -3'
miRNA:   3'- -CUGGCCGAACUCGGUU-----GGCUC-GGAgc -5'
28308 3' -58.2 NC_005905.1 + 21791 0.73 0.313174
Target:  5'- aGGCCGGCUUuGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAAcUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21736 0.73 0.313174
Target:  5'- aGGCCGGCUUGAGCCGuugaGgUGGGUCaCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGU----UgGCUCGGaGC- -5'
28308 3' -58.2 NC_005905.1 + 9062 0.75 0.228306
Target:  5'- -gUCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 20060 0.75 0.228306
Target:  5'- -gUCGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17420 0.75 0.222655
Target:  5'- aGGuuGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17530 0.75 0.222655
Target:  5'- aGGuuGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17310 0.75 0.222655
Target:  5'- aGGuuGGCUUGGGCCAAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 17243 0.75 0.206412
Target:  5'- -cCCGGCUUGGGCCGAgUuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 22106 0.78 0.151354
Target:  5'- aGGCCGGUUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.