miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28308 3' -58.2 NC_005905.1 + 49490 0.92 0.015658
Target:  5'- aGACCGGCUUGAGCCuACCGGGUUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGuUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49446 1.08 0.001046
Target:  5'- gGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49401 1.08 0.000988
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49356 1.06 0.001516
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGc -5'
28308 3' -58.2 NC_005905.1 + 49311 1.08 0.000988
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49266 1.09 0.000907
Target:  5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49221 1.09 0.000907
Target:  5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49176 1.08 0.000988
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49131 1.09 0.000907
Target:  5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49086 1.09 0.000907
Target:  5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 49041 1.04 0.002017
Target:  5'- aGACCGGCUUGAGCCGACCGAGCUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 22176 0.73 0.313174
Target:  5'- aGGCCGGCUUGGGUCGAaugagUCGAGgCCUg- -3'
miRNA:   3'- -CUGGCCGAACUCGGUU-----GGCUC-GGAgc -5'
28308 3' -58.2 NC_005905.1 + 22106 0.78 0.151354
Target:  5'- aGGCCGGUUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 22061 0.83 0.061951
Target:  5'- aGGCCGGCUUGAGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21971 0.82 0.079369
Target:  5'- aGGCCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21926 0.82 0.079369
Target:  5'- aGGCCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21881 0.82 0.079369
Target:  5'- aGGCCGGCUUGGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21836 0.72 0.343698
Target:  5'- aGGCCGGCUUGAaCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUcGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21791 0.73 0.313174
Target:  5'- aGGCCGGCUUuGGCCAAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAAcUCGGUUgGcUCGGAGC- -5'
28308 3' -58.2 NC_005905.1 + 21736 0.73 0.313174
Target:  5'- aGGCCGGCUUGAGCCGuugaGgUGGGUCaCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGU----UgGCUCGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.