Results 61 - 66 of 66 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 28308 | 3' | -58.2 | NC_005905.1 | + | 49311 | 1.08 | 0.000988 |
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Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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| 28308 | 3' | -58.2 | NC_005905.1 | + | 49401 | 1.08 | 0.000988 |
|
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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| 28308 | 3' | -58.2 | NC_005905.1 | + | 49086 | 1.09 | 0.000907 |
|
Target: 5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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| 28308 | 3' | -58.2 | NC_005905.1 | + | 49131 | 1.09 | 0.000907 |
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Target: 5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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| 28308 | 3' | -58.2 | NC_005905.1 | + | 49221 | 1.09 | 0.000907 |
|
Target: 5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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| 28308 | 3' | -58.2 | NC_005905.1 | + | 49266 | 1.09 | 0.000907 |
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Target: 5'- aGACCGGCUUGAGCCAACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGUUGGCUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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