miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28308 5' -51.4 NC_005905.1 + 17931 0.68 0.892892
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3'
miRNA:   3'- uagUUUAGaUCuGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 22026 0.69 0.83604
Target:  5'- uAUCGAGUCUAGuuCGGUUUGAaCCa- -3'
miRNA:   3'- -UAGUUUAGAUCugGCCGAACUcGGcu -5'
28308 5' -51.4 NC_005905.1 + 17210 0.69 0.826976
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17540 0.69 0.826976
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17430 0.69 0.826976
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17320 0.69 0.826976
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17931 0.71 0.705032
Target:  5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uaGU-UUAGAUCUGGCCGAACUCggCU- -5'
28308 5' -51.4 NC_005905.1 + 9052 0.73 0.627749
Target:  5'- -cCGAGUCcAGGUCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 8724 0.73 0.61664
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGaucUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17365 0.74 0.572436
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUUAGaUCuGGCCGAAcUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 17585 0.74 0.572436
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUUAGaUCuGGCCGAAcUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 17475 0.74 0.572436
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUUAGaUCuGGCCGAAcUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 9115 0.74 0.572436
Target:  5'- uAUUGAAUUUAGcCCGGCUUGGGCaGAg -3'
miRNA:   3'- -UAGUUUAGAUCuGGCCGAACUCGgCU- -5'
28308 5' -51.4 NC_005905.1 + 17779 0.75 0.486879
Target:  5'- uAUCGAAUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5'
28308 5' -51.4 NC_005905.1 + 17649 0.75 0.486879
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5'
28308 5' -51.4 NC_005905.1 + 19523 0.75 0.486879
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5'
28308 5' -51.4 NC_005905.1 + 8896 0.76 0.476589
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCaGAg -3'
miRNA:   3'- -UAGUUUAGaUCuGGCCGAACUCGgCU- -5'
28308 5' -51.4 NC_005905.1 + 8614 0.77 0.417291
Target:  5'- -cCGuGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUuUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 21799 0.77 0.398545
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCa- -3'
miRNA:   3'- uaGUUUAGAUCUGGCCGAAcUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 20072 0.77 0.389376
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.