miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28308 5' -51.4 NC_005905.1 + 49366 1.07 0.004987
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 49411 1.07 0.004987
Target:  5'- uAUCAAAUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 49321 1.07 0.004987
Target:  5'- uAUCAAAUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 49051 1.07 0.004987
Target:  5'- uAUCAAAUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 49186 1.07 0.004987
Target:  5'- uAUCAAAUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 49456 1.06 0.005459
Target:  5'- uAUCAAAUCUGGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 49096 1 0.013456
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 49231 1 0.013456
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 49500 1 0.015633
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCu- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 49276 1 0.013456
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 49141 1 0.013456
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 21934 0.92 0.045672
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 22116 0.92 0.04704
Target:  5'- uAUCGAGUCUAGGCCGGUUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 21889 0.92 0.045672
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 21979 0.92 0.045672
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17824 0.92 0.049895
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19632 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 20027 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19852 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 22069 0.89 0.075152
Target:  5'- -cCGAGUUUAGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUUAGAUCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.