miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28309 3' -60 NC_005905.1 + 19887 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 19732 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 17814 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 17704 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 20127 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 19952 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 8796 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 8622 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 8841 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11623 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11818 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11753 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11363 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11688 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11298 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11168 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11233 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11428 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11493 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28309 3' -60 NC_005905.1 + 11558 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.