Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28309 | 3' | -60 | NC_005905.1 | + | 11558 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 19622 | 0.73 | 0.246508 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGc -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 19842 | 0.73 | 0.229077 |
Target: 5'- aGACCGGCUUGGGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 22061 | 0.74 | 0.212699 |
Target: 5'- aGGCCGGCUUGAGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 22176 | 0.74 | 0.212699 |
Target: 5'- aGGCCGGCUUGGGUCGAaugagUCGAGgCCUg- -3' miRNA: 3'- -CUGGCCGAACUCGGCU-----GGCUC-GGAgc -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 17704 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 17814 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 19732 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 19887 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 21971 | 0.72 | 0.265024 |
Target: 5'- aGGCCGGCUUGGGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 21926 | 0.72 | 0.265024 |
Target: 5'- aGGCCGGCUUGGGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 21881 | 0.72 | 0.265024 |
Target: 5'- aGGCCGGCUUGGGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 49401 | 1.09 | 0.000694 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 17310 | 0.66 | 0.601768 |
Target: 5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 17420 | 0.66 | 0.601768 |
Target: 5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 17530 | 0.66 | 0.601768 |
Target: 5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 22106 | 0.68 | 0.453479 |
Target: 5'- aGGCCGGUUUGGGCCaAgUuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 17859 | 0.69 | 0.426136 |
Target: 5'- aGCuCGGCUUGuGCCGAgUuAGCUUCGa -3' miRNA: 3'- cUG-GCCGAACuCGGCUgGcUCGGAGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 21736 | 0.72 | 0.277984 |
Target: 5'- aGGCCGGCUUGAGCCGuugaGgUGGGUCaCGa -3' miRNA: 3'- -CUGGCCGAACUCGGC----UgGCUCGGaGC- -5' |
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28309 | 3' | -60 | NC_005905.1 | + | 19577 | 0.72 | 0.271442 |
Target: 5'- aGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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