miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28309 5' -53.5 NC_005905.1 + 49276 1.04 0.004249
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 49141 1.04 0.004249
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 49096 1.04 0.004249
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 49231 1.04 0.004249
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 49366 1.03 0.004651
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 49500 0.99 0.008498
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCu- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGuu -5'
28309 5' -53.5 NC_005905.1 + 21979 0.97 0.013341
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 21934 0.97 0.013341
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 21889 0.97 0.013341
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 22116 0.96 0.013748
Target:  5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17824 0.96 0.014598
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 20197 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 19632 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 19852 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 20027 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 22069 0.93 0.022204
Target:  5'- -cCGAGUUUAGGCCGGCUUGAGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 17714 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 20137 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 19897 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 19962 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.