miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28309 5' -53.5 NC_005905.1 + 8896 0.75 0.360977
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCa-- -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGguu -5'
28309 5' -53.5 NC_005905.1 + 11680 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11745 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11810 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 8833 0.88 0.051004
Target:  5'- -cCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 8677 0.85 0.083801
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 8614 0.8 0.184578
Target:  5'- -cCGuGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUuCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 8724 0.78 0.241245
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaucUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 9052 0.78 0.247647
Target:  5'- -cCGAGUCcAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11615 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11550 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11485 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 9005 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 8943 0.9 0.039095
Target:  5'- -cCGAGUCcAGGCCGGCUUGAGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11095 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11160 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11225 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11290 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11355 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28309 5' -53.5 NC_005905.1 + 11420 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.