miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 3' -60 NC_005905.1 + 49401 1.09 0.000694
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49176 1.09 0.000694
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49311 1.09 0.000694
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49446 1.08 0.000734
Target:  5'- gGACCGGCUUGAGCCGACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49356 1.06 0.001058
Target:  5'- aGACCGGCUUGAGCCGACCGAGCCUCa -3'
miRNA:   3'- -CUGGCCGAACUCGGCUGGCUCGGAGc -5'
28310 3' -60 NC_005905.1 + 49041 1.04 0.0014
Target:  5'- aGACCGGCUUGAGCCGACCGAGCUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49266 0.99 0.003635
Target:  5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49131 0.99 0.003635
Target:  5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49086 0.99 0.003635
Target:  5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49221 0.99 0.003635
Target:  5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 49490 0.89 0.018913
Target:  5'- aGACCGGCUUGAGCCuACCGGGUUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 20187 0.8 0.08333
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19777 0.79 0.097853
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCCUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17243 0.77 0.137876
Target:  5'- -cCCGGCUUGGGCCGAgUuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGCUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8951 0.76 0.156945
Target:  5'- aGGCCGGCUUGAGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11753 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11103 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11168 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11428 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11363 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.