miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 3' -60 NC_005905.1 + 8622 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8689 0.69 0.426136
Target:  5'- -cCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8733 0.72 0.291445
Target:  5'- aACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8796 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8841 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8908 0.67 0.560837
Target:  5'- -cCCGGCUUGGGCaGAgUuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGgCUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8951 0.76 0.156945
Target:  5'- aGGCCGGCUUGAGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 9015 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 9062 0.66 0.612076
Target:  5'- -gUCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11103 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11168 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11233 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11298 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11363 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11428 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11493 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11558 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11623 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11688 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 11753 0.75 0.169503
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.