Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28310 | 3' | -60 | NC_005905.1 | + | 8622 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8689 | 0.69 | 0.426136 |
Target: 5'- -cCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8733 | 0.72 | 0.291445 |
Target: 5'- aACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8796 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8841 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8908 | 0.67 | 0.560837 |
Target: 5'- -cCCGGCUUGGGCaGAgUuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGgCUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8951 | 0.76 | 0.156945 |
Target: 5'- aGGCCGGCUUGAGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 9015 | 0.74 | 0.197337 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 9062 | 0.66 | 0.612076 |
Target: 5'- -gUCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11103 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11168 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11233 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11298 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11363 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11428 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11493 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11558 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11623 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11688 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11753 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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