miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 5' -53.7 NC_005905.1 + 49366 1.07 0.003117
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49276 1 0.008286
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 49141 1 0.008286
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 49231 1 0.008286
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 49096 1 0.008286
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 49500 1 0.009607
Target:  5'- uAUCAAGUCUAGACCGGCUUGAGCCu- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 49321 0.95 0.018384
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49411 0.95 0.018384
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49051 0.95 0.018384
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49186 0.95 0.018384
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 49456 0.95 0.02008
Target:  5'- uAUCAAaUCUGGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 21889 0.93 0.02773
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 21979 0.93 0.02773
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 21934 0.93 0.02773
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 22116 0.93 0.028554
Target:  5'- uAUCGAGUCUAGGCCGGUUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17824 0.92 0.030275
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20197 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19632 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19852 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20027 0.9 0.044224
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.