Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28310 | 5' | -53.7 | NC_005905.1 | + | 9052 | 0.74 | 0.431535 |
Target: 5'- -cCGAGUCcAGGUCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11680 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11745 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11810 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 8833 | 0.84 | 0.101507 |
Target: 5'- -cCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 8677 | 0.81 | 0.16251 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 8896 | 0.77 | 0.3111 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCaGAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGgCU- -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 8614 | 0.76 | 0.334616 |
Target: 5'- -cCGuGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUuCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 8724 | 0.74 | 0.422061 |
Target: 5'- -cCGAGUCcaaACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaucUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11615 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11550 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11485 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 9005 | 0.89 | 0.05262 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 8943 | 0.86 | 0.078662 |
Target: 5'- -cCGAGUCcAGGCCGGCUUGAGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11095 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11160 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11225 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11290 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11355 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 11420 | 0.86 | 0.08567 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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