Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28310 | 5' | -53.7 | NC_005905.1 | + | 19742 | 0.89 | 0.05262 |
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Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17714 | 0.89 | 0.05262 |
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Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17255 | 0.88 | 0.059059 |
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Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGCU- -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 21744 | 0.85 | 0.095943 |
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Target: 5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3' miRNA: 3'- uaGUUCAgAUCUGGCCGAACUCGGCu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 21844 | 0.82 | 0.141759 |
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Target: 5'- -cCGAGUCUAGGCCGGCUUGAaCCa- -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUcGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17869 | 0.81 | 0.176239 |
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Target: 5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGUUCAGAUCuGGCCGAACuCGGCU- -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 19588 | 0.79 | 0.223757 |
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Target: 5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaucUGGCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 20072 | 0.78 | 0.248169 |
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Target: 5'- uAUCGAGUCcAGGUCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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| 28310 | 5' | -53.7 | NC_005905.1 | + | 17931 | 0.69 | 0.716203 |
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Target: 5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3' miRNA: 3'- uagUUCAGaUCuGGCCGAACUCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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