miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 3' -55.9 NC_005905.1 + 11818 0.72 0.443764
Target:  5'- aGACCGGCUUGGGCCaagcuagcuucgaUAaguaCGGGUguugUUGa -3'
miRNA:   3'- -CUGGCCGAACUCGG-------------AUg---GCCCAa---AGC- -5'
28311 3' -55.9 NC_005905.1 + 11753 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11688 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11623 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11558 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11493 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11428 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11363 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11298 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11233 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11168 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 11103 0.66 0.792283
Target:  5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 8951 0.67 0.763322
Target:  5'- aGGCCGGCUUGAGCCaaGCUa-GcUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 49176 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCgACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49131 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49086 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49446 0.78 0.21348
Target:  5'- gGACCGGCUUGAGCCgACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 21736 0.76 0.281086
Target:  5'- aGGCCGGCUUGAGCCguugaGgUGGGUcaCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGa----UgGCCCAaaGC- -5'
28311 3' -55.9 NC_005905.1 + 49356 0.75 0.295066
Target:  5'- aGACCGGCUUGAGCCgACCGaGccUCa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGc -5'
28311 3' -55.9 NC_005905.1 + 49490 1.1 0.001399
Target:  5'- aGACCGGCUUGAGCCUACCGGGUUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGAUGGCCCAAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.