miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 3' -55.9 NC_005905.1 + 49221 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49176 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCgACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49131 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49086 0.78 0.2028
Target:  5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5'
28311 3' -55.9 NC_005905.1 + 49041 0.81 0.122676
Target:  5'- aGACCGGCUUGAGCCgACCGaGcUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGaUGGCcCaAAGC- -5'
28311 3' -55.9 NC_005905.1 + 49490 1.1 0.001399
Target:  5'- aGACCGGCUUGAGCCUACCGGGUUUCGg -3'
miRNA:   3'- -CUGGCCGAACUCGGAUGGCCCAAAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.