miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 5' -53.4 NC_005905.1 + 49456 1.07 0.003312
Target:  5'- uAUCAAAUCUGGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGACCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 49366 0.94 0.022703
Target:  5'- uAUCAAGUCUaGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 49051 0.94 0.022703
Target:  5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 49411 0.94 0.022703
Target:  5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 49321 0.94 0.022703
Target:  5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 49186 0.94 0.022703
Target:  5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 49231 0.88 0.059489
Target:  5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 49276 0.88 0.059489
Target:  5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 49096 0.88 0.059489
Target:  5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 49141 0.88 0.059489
Target:  5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 49500 0.87 0.068701
Target:  5'- uAUCAAGUCUaGACCGGCUUGAGCCu- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 21934 0.81 0.187662
Target:  5'- -cCGAGUCUaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 21889 0.81 0.187662
Target:  5'- -cCGAGUCUaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 21979 0.81 0.187662
Target:  5'- -cCGAGUCUaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 22116 0.8 0.192748
Target:  5'- uAUCGAGUCUaGGCCGGUUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 20027 0.8 0.203282
Target:  5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 20197 0.8 0.203282
Target:  5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17824 0.8 0.203282
Target:  5'- uAUCGAGUUUaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19632 0.8 0.203282
Target:  5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19852 0.8 0.203282
Target:  5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.